PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026106-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 78aa    MW: 8818.74 Da    PI: 5.0629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026106-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-08750344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    +++  a + + ++   +W+ +a+++  g++++++k ++
  PSME_00026106-RA  7 SWTSKQNKQFETALAVHDKDtpdRWHNVASMVD-GKSPEEVKKHY 50
                      6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-6456IPR001005SANT/Myb domain
PfamPF002497.3E-6750IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-12759IPR009057Homeodomain-like
CDDcd001672.94E-6754No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4757IPR009057Homeodomain-like
PROSITE profilePS500906.098754IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAGQSASWTS KQNKQFETAL AVHDKDTPDR WHNVASMVDG KSPEEVKKHY EILLEDLDCI  60
EAGQVPYPNY KSEASRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-31372675RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134982e-62BT113498.1 Picea glauca clone GQ03411_B22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690864.12e-32PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS32e-32RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC16e-35D5ADC1_PICSI; Putative uncharacterized protein
STRINGGSMUA_Achr2P22930_0016e-32(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-32RAD-like 6